rs48457345 SNP Detail

Summary

• ID
  rs48457345
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:14713375 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAGTGGAC AAATGAGGCA
  GACTAAAGTC TCATGGAATA GCTGAGGGGA GTCACGTGAG TAAAGCACGT GATTACAAGC
  ACAAGCCACA CGACATGTGG GGTGCAAGCC CCCCTTGGAA AAGCGAGTTT TTCCATACAG
  GCACAGAGAG GATGACAGCA GCAGGCAATA ACGAGTAAGC TAAAGTAAAC TCGCTCCTAT
  Y
  CACTACATCT GCAAGAAGCA CAAAAACAAA TTTCAAGAAC AATTTTGTGC TTTTGAGGAA
  ACTGAGGGCA CCAGTCTCTT GTCTTGTTTT CTTGGAGTTT TCTCACAAGT GCTCAGACTT
  CTCACATGAC TCCATTGATG GGCAAGTCCT GACAATGAGG CTGAAGAGGA AGAGTCACAA
  GCCAGTCCGT CTAACCAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss60371907	NES15873932	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T		C	T	T		T
ss320666903	CHEV_3_14648315	CHEVERUD	SCREENING_POP	f	SNP											T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs48457345					SNP	T	T	T	T	T	T	C	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60371907	NES15873932	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:14713375 () rs orientation: forward

Symbol	Name	Function Class
Car13	carbonic anhydrase 13	Intron
Rr374549	regulatory region 374549	within coordinates
Rr573698	regulatory region 573698	416 bp proximal
Tssr28416	transcription start site region 28416	1518 bp upstream