rs48439170 SNP Detail

Summary

• ID
  rs48439170
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:16716133 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATGTAAAC TAGGCGGCTT
  TGAACTCACA AAGATCAGCC TTCTTCCCTC CTGAATGCTA GGAATAAAGG TGTTTGGCTC
  CGCCCTTGGC TACAGGTACT TATGTGCTAC CAAGTGGGTG CTCACAACCA AACCCAGGTC
  CTCTGCAAGA GCAGTCAGTG CTCTAAACCA CTGAGCCATC TCTCCAGGTC CACCTCCTGA
  Y
  TTCTCCCAGG ATCTGACTTC AGTTGGAAGG TTTCATGAGG GTCGACTCAT AACTGTAATT
  TCAGTTCCAG AGGATCCAAT GTCCTCATCT GACCTGCATG GCATCAGGCA TGCATGTGCT
  ACACAGACAT ACAAGCAGAC AAAACACTCA GACATAATAT ATAAAAAGCA TTTAAAAAGG
  AACGATTTTT AAAAATAACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss148401825	ENSMUSSNP1464329	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs48439170					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16716133 () rs orientation: forward

Symbol	Name	Function Class
Pnma8c	PNMA family member 8C	875 bp upstream
Rr642834	regulatory region 642834	1402 bp distal
Rr642835	regulatory region 642835	388 bp proximal
Tssr64666	transcription start site region 64666	857 bp upstream
Tssr64667	transcription start site region 64667	965 bp upstream