rs48438425 SNP Detail

Summary

• ID
  rs48438425
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:21496712 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGTAGCAC ACTCCCACCT
  TAGCTAAGTG TCGGGATTGC AGGCACCCAA TGCTACGTGT GCCCCAGTGT TAGGACTTAA
  CAGTAACACA ACAGTGTAAG AGGAGGAGCA TCTACCTGGG GGCTGGCTTG CCGGGACAGC
  TTGAAGTCAT GGACCATTCT TAGGCTTGTC TGGCTAGAAA TCAAGTGACT TTAGGGAAGA
  M
  ACTGATTGTC AGGAGAAAAT AGAGAATCAG AGCAACGTAA CACTGACATA AATTTTCCAC
  TCATGAACTT TTGGGGAATA CATTCAAGCC ATAAAAAGGT CTTGATCTTC AAGTCTTAAG
  AGAGAAAAAA AAAACTTTTT TTTTAAACTA AGAAGGTACT AAAAGCTTAA GGAGCTGAAG
  AGTTTTGATT AATCATTAAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61258584	NES16881726	PERLEGEN	MM_PANEL2	f	SNP	C	C	A	C	C	C	C	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48438425					SNP	C	C	A	C	C	C	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61258584	NES16881726	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:21496712 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
1700020N01Rik	RIKEN cDNA 1700020N01 gene			Intron
				Noncoding-Transcript-Variant
Rr1737	regulatory region 1737			within coordinates
Rr428751	regulatory region 428751			1792 bp distal
Rr428752	regulatory region 428752			1027 bp distal