rs48345681 SNP Detail

Summary

• ID
  rs48345681
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:16718413 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTTTGGGA CTGAGTGACT
  GTGGATAGGA GGTGATAGAC CAGGGAATGG GTGGCTTTTG AGCCAGAAAG ATTAGCACCT
  GAATGTGGCA CATTGTTTTG GCCTTGTCAG GAAAGCCTAT TTATTCTGCT CAATCTTGGG
  GACTGAGCTA GGAAGCCTTT AGCATGCCAC ACAAGCGCTC TATCACTGAA CCACGCACCC
  R
  GACCCGCACT GGGAGATTCT AGGCAAACTG TGTTAGTGAA CTATATCTGC AGTCTGAGCC
  TAGTACTTCC TAACTTGGGG GCTAGAGCTG AGTGGGTGTG GCCTACAGAG TGTTTTTTTG
  TTCACTCTGT ATATGTCTAT TTCACACCCA CAATATTCCA GAATGGTACT TGGATCTTGG
  AATAAAAAGG GAGGAAAAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148401979	ENSMUSSNP6439979	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48345681					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16718413 () rs orientation: forward

Symbol	Name	Function Class
Pnma8c	PNMA family member 8C	mRNA-UTR
Rr642835	regulatory region 642835	1392 bp distal
Tssr64666	transcription start site region 64666	1338 bp downstream
Tssr64667	transcription start site region 64667	1305 bp downstream