rs48307930 SNP Detail

Summary

• ID
  rs48307930
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:132441962 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACTGTAAC TCTAGTTCTA
  GGGGATCTGA CCCCCTCTTC TGGTCTCCAG GGGACCAGGC ACATATGTGG TTCACAGATA
  TACATACAGG TAAAACACTC ATACACATAA AATGAGATAA TTTTTTAAAA AGTAGTTTTA
  CCTTAAAAGA GTTTTCCTAC ATTTTAAAAT GACCTAAATA GAAAACAATT ACCACACACA
  Y
  ATATATATGT GTGTGTGTAT ATATATATAT ATATTTTTTT TTTTTCTAGG CAAGCAGCCT
  ACCGATTGAG CCACATCCCT AAACTTCTAT GTGTTTTTAG GCAGGAAGAC TGAAAGAAAA
  GAACTTTCCC TCTTTCTACC TCTACAGCAT ACCTGACAAT TACATCATCC CAAACCAGGA
  AGAAAACATG GGGATGTTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147621230	ENSMUSSNP5772421	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48307930					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:132441962 () rs orientation: forward

Symbol	Name	Function Class
AU019990	expressed sequence AU019990	within coordinates
Gm75202	predicted gene, 75202	within coordinates
Rr565498	regulatory region 565498	1837 bp distal
Rr565499	regulatory region 565499	1594 bp distal
Rr565500	regulatory region 565500	499 bp distal
Rr565501	regulatory region 565501	147 bp proximal
Rr565502	regulatory region 565502	1810 bp proximal
Tssr663	transcription start site region 663	517 bp downstream
Tssr20313	transcription start site region 20313	580 bp downstream
Tssr26480	transcription start site region 26480	1126 bp downstream