rs48221974 SNP Detail

Summary

• ID
  rs48221974
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:14713028 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCACCCAGA ACTTCCACCA
  CTGCAGTTTA ACTGCCAGGT GGCATTTCTT GACCTGTTAC TTTAGTGATT TATTTGAAAG
  AGTTTACTTT TTTGGAAATT CTAAGTGAAA GGAAATAAAA GTAGGTATGA GTTTGGAGAG
  ATCATTACTT GTTTTGAAGA ATAAAATGGA GACAATGATT AATTATTCAC TGATCTGTGA
  Y
  GGAAAGTAAA ATAAAAATTG GTCATGTGAA AACACAAAAT CACTTTCATT AAAATTAAGG
  ATTGTTGCCT ACTACTGTGG AGCACATCTG CAGTCCCTTC CCTTGTGAGG TACTTATCTC
  TCTAGAGGCA CTAGGACCTG GGAGAATGGA GTGGACAAAT GAGGCAGACT AAAGTCTCAT
  GGAATAGCTG AGGGGAGTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60371910	NES15873929	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs48221974					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60371910	NES15873929	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:14713028 () rs orientation: forward

Symbol	Name	Function Class
Car13	carbonic anhydrase 13	Intron
Rr374549	regulatory region 374549	within coordinates
Rr573698	regulatory region 573698	763 bp proximal
Tssr28416	transcription start site region 28416	1865 bp upstream