rs48221798 SNP Detail

Summary

• ID
  rs48221798
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:16716150 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTGAACTC ACAAAGATCA
  GCCTTCTTCC CTCCTGAATG CTAGGAATAA AGGTGTTTGG CTCCGCCCTT GGCTACAGGT
  ACTTATGTGC TACCAAGTGG GTGCTCACAA CCAAACCCAG GTCCTCTGCA AGAGCAGTCA
  GTGCTCTAAA CCACTGAGCC ATCTCTCCAG GTCCACCTCC TGACTTCTCC CAGGATCTGA
  Y
  TTCAGTTGGA AGGTTTCATG AGGGTCGACT CATAACTGTA ATTTCAGTTC CAGAGGATCC
  AATGTCCTCA TCTGACCTGC ATGGCATCAG GCATGCATGT GCTACACAGA CATACAAGCA
  GACAAAACAC TCAGACATAA TATATAAAAA GCATTTAAAA AGGAACGATT TTTAAAAATA
  ACTTTCCACC TGTGTATGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss148401828	ENSMUSSNP4801531	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs48221798					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16716150 () rs orientation: forward

Symbol	Name	Function Class
Pnma8c	PNMA family member 8C	858 bp upstream
Rr642834	regulatory region 642834	1419 bp distal
Rr642835	regulatory region 642835	371 bp proximal
Tssr64666	transcription start site region 64666	840 bp upstream
Tssr64667	transcription start site region 64667	948 bp upstream