rs48206855 SNP Detail

Summary

• ID
  rs48206855
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:118943502 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGAAAACCTG ACAGAGGAGC AACGAAGCGC GTTCGAGCCG
  GGTGAAGTGG GGGGAGTGTG GTGTGTGCAG AGCCGGCTGC CCGGAGGAGC GAGCGGCCCG
  Y
  GGCCGCGGGA CAGGTGAGTG TGCGGCGCCG GCGCACCCCT TCCATGGCCG CTCGGCTTCT
  TGAGCCGGCT CAGGCCAGTG CTCCCGTAGC CAGCTTTGT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147323381	ENSMUSSNP5165520	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss320473766	CHEV_2_118938757	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48206855					SNP	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118943502 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12105	CpG island 12105			within coordinates
Gm57476	predicted gene, 57476			191 bp upstream
Rad51	RAD51 recombinase			mRNA-UTR
				Noncoding-Transcript-Variant
Rr563414	regulatory region 563414			1471 bp distal
Rr563415	regulatory region 563415			1280 bp distal
Rr563416	regulatory region 563416			204 bp distal
Rr563417	regulatory region 563417			within coordinates
Tssr19603	transcription start site region 19603			139 bp downstream
Tssr25799	transcription start site region 25799			252 bp upstream