rs48195356 SNP Detail

Summary

• ID
  rs48195356
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:53372452 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                      T AAGACTAGGG TTGCTGGTCG TGGTGGCGCA CGCCTTTAAT
  CCCAGCACTC GGGAGGCAGA GGCAGGCGGA TTTCTGAGTT CGAGGTCAGC CTGGTCTACA
  R
  AGTGAGTTCC AGGACAGCCA GGACTATACA GAGAAACCCT GTCTCGGAAA AAAAAAAAAA
  AAAAGAAAGA AAAAACAACA ACAACAACAA CAACAAAGAC T                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148948707	ENSMUSSNP6654419	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48195356					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:53372452 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi13163	CpG island 13163	984 bp distal
Nhlrc3	NHL repeat containing 3	1773 bp upstream
Proser1	proline and serine rich 1	Intron
Rr374971	regulatory region 374971	511 bp downstream
Rr576697	regulatory region 576697	1355 bp distal
Rr576698	regulatory region 576698	1419 bp distal
Rr576699	regulatory region 576699	346 bp distal
Rr576700	regulatory region 576700	1428 bp proximal
Tssr29113	transcription start site region 29113	1441 bp downstream
Tssr29114	transcription start site region 29114	1350 bp downstream
Tssr29115	transcription start site region 29115	1322 bp downstream
Tssr29116	transcription start site region 29116	1209 bp downstream
Tssr29117	transcription start site region 29117	1125 bp downstream
Tssr33269	transcription start site region 33269	1799 bp upstream
Tssr33270	transcription start site region 33270	1725 bp upstream