rs48175508 SNP Detail

Summary

• ID
  rs48175508
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:90420345 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGCGGTATTC TTAACATGAC TGCCTGTTCT AGTCCTTTTC
  TCTGCAAAAT CATCCCTTTC CATCAGGTAG GTAGAAGGAA GGGAGAAGAG ATGTCTGAGG
  Y
  TTTTCCTTGG AGACGAGCTT TGTAGGTGTT CTTCCTGATG CTGTCCATTG CTGCCACGGG
  CCAGCGTTGG TTCGGTAGCT CCAGTGGGAG CAGGCTAGGG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss60424395	NES15924196	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs48175508					SNP	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60424395	NES15924196	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90420345 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13466	CpG island 13466	1146 bp proximal
Gm56783	predicted gene, 56783	1336 bp downstream
Rr375350	regulatory region 375350	within coordinates
Rr580384	regulatory region 580384	24 bp proximal
Rr580385	regulatory region 580385	923 bp proximal
Rr580386	regulatory region 580386	1040 bp proximal
Rr580387	regulatory region 580387	1230 bp proximal
Rr580388	regulatory region 580388	1340 bp proximal
Rr580389	regulatory region 580389	1344 bp proximal
Rr580390	regulatory region 580390	1408 bp proximal
S100a1	S100 calcium binding protein A1	Intron
S100a13	S100 calcium binding protein A13	1314 bp upstream
Tssr30209	transcription start site region 30209	1880 bp upstream
Tssr30210	transcription start site region 30210	1946 bp upstream
Tssr34240	transcription start site region 34240	1864 bp upstream
Tssr34241	transcription start site region 34241	972 bp upstream
Tssr34242	transcription start site region 34242	1212 bp downstream
Tssr34243	transcription start site region 34243	1318 bp downstream
Tssr34244	transcription start site region 34244	1332 bp downstream
Tssr34245	transcription start site region 34245	1367 bp downstream