rs48124860 SNP Detail

Summary

• ID
  rs48124860
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:58942369 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATCC TGCTTTTAAA CATTCAAATG
  R
  ACACCCCACC CTCCATCTGA AGCAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss146397883	ENSMUSSNP6627549	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss321139681	CHEV_4_58955241	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs48124860					SNP	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:58942369 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14341	CpG island 14341	1069 bp proximal
Rr592951	regulatory region 592951	769 bp proximal
Rr592952	regulatory region 592952	1270 bp proximal
Tssr37403	transcription start site region 37403	1206 bp upstream
Zkscan16	zinc finger with KRAB and SCAN domains 16	1259 bp upstream