rs48122881 SNP Detail

Summary

• ID
  rs48122881
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:168009425 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGTCCGA GGGCTGTTAG
  CTGGGTTATC CTCTCTACAC CCCCACCTTT CACTGACTTC CTGGGAGCCG GTCCCGGAGT
  GCTGAGGGAG CAGGCCAGTC AGGCTTCTGG TCCTGCTGGC CTCTTGAGTG TATGCTTTCT
  TTGGGAGGTG AAAGCCAGTT CTTGCAGATG CATAACTCTC GACCACTGAG TCACACCCCC
  A
  GCCCTTTGGG GGACAGGATC TCTGTGTAAC GCAGGCTGCC CTTAAACTCA TGATAAACTC
  CTGCCTCCAC CCCCTGAGAG CTGCGATTTG TTATTGCATC TTTGGGGTTT TGATATTTAT
  TTATTATTAT TCATGCATAT GATGTGTGTG TGTGCGCGCG CGTGTGCTCA TGTGTGCGCA
  CGCGTGGGTC TATGTGTCAC                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss148267267	ENSMUSSNP3540155	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	A/J
rs48122881					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:168009425 () rs orientation: forward

Symbol	Name	Function Class
Gm52960	predicted gene, 52960	within coordinates
Gm54130	predicted gene, 54130	933 bp upstream
Rr570912	regulatory region 570912	46 bp distal
Rr570913	regulatory region 570913	1079 bp proximal
Rr570914	regulatory region 570914	1716 bp proximal