rs48091959 SNP Detail

Summary

• ID
  rs48091959
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:62247284 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             GACTCCGACG GCCCAAGTCA CCCCTGGTTT CTTACGCGGC GTCGGGCGGC
  W
  CCCCGAAGTC CACTTCTAAT GGCACCGTGG CCTCGCCCGC GGCGCTGTTG           
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss60415939	NES15920343	PERLEGEN	MM_PANEL2	f	SNP	T	T	A	T	A	T
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs48091959					SNP	T	T	A	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60415939	NES15920343	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:62247284 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
9330121J05Rik	RIKEN cDNA 9330121J05 gene			within coordinates
Arhgef26	Rho guanine nucleotide exchange factor 26			Coding-NonSynonymous
				Noncoding-Transcript-Variant
Cpgi13214	CpG island 13214			within coordinates
Gm33923	predicted gene, 33923			1528 bp downstream
Rr375082	regulatory region 375082			1420 bp upstream
Rr577511	regulatory region 577511			659 bp proximal
Tssr29350	transcription start site region 29350			851 bp downstream
Tssr29351	transcription start site region 29351			826 bp downstream
Tssr29352	transcription start site region 29352			253 bp downstream
Tssr29353	transcription start site region 29353			183 bp upstream