rs48090388 SNP Detail

Summary

• ID
  rs48090388
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:84209129 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAAGGGAG GGAGGGACCG
  GTTCCACAGT CAGCAAGTTT GGGAACAGAT GAGAAACTTT GATCAGGCTC CTGATTGCCC
  TGAGAACCAG GGTGACCTGA AGGAGGTGCT GAGCCTTGTG TGGCCCCTGA GCTGCTGCTG
  CTGCTGCTGC TGCTGCTGCT GAGTCCTCTG TGTAGATAGT GTTCTCCATC TGTGGGACCC
  R
  CTGTCCTGAT GGACAGCTGC ACAGCTCTGG CTGACCAAGT CCTCCAATCG CCGCTGCACT
  TGAGGATGGG CAGCAGCTGG AAGGGGCTCT GCCTGGCCAG TTCATGGTCA CTGTCAGCCT
  CAGCCTGCCA ATGTCATCCA ATCTGCCCGT GTGGAGTGTG GAGCAGCTGA CAGGTTCTGC
  GCTCCTCCTC CCTCCCCCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60904825	NES15950916	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48090388					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60904825	NES15950916	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:84209129 () rs orientation: forward

Symbol	Name	Function Class
Gm44127	predicted gene, 44127	within coordinates
Rr633014	regulatory region 633014	1686 bp distal
Rr633015	regulatory region 633015	972 bp distal
Rr633016	regulatory region 633016	606 bp distal
Rr633017	regulatory region 633017	1680 bp proximal