rs48089229 SNP Detail

Summary

• ID
  rs48089229
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:111331898 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTGTTCTG AGTAAATAGG
  CCAGGCTCCC ATACCATCAG GAATGGGAAC TCAATGCCCC TCCCACCTGC TGCTCAGCTG
  TGATCCAGTC ACCGCAATGA CATCTGTCCT AACATGCTGG GTTAAACAGC CAGTTGTGCA
  GGGACCTGAG CAAGCTCGGT GCACTGAAGA GGCTGCTCAG ATCCTAGGAA ATACTGCCGC
  M
  CAGGCAGGCC CTATGTAAGG ATGGGCACAG GGTCTTACAG CTCACATTTC CGCAAGCCCT
  TGACATGGTT GAGGCTCCTG ATGCTAGGGA GCCCTCCAGT GTTGTCCTCA TCTAGCTCAT
  ATGCAGACTA CCAGAGCTTG GTCTCTAGAA AAACCTTGTT CTTCTCATCC TGGGCCCCTT
  AGGCTCCAGT CTCTCCTAAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss147204205	ENSMUSSNP5240369	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs48089229					SNP	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:111331898 () rs orientation: forward

Symbol	Name	Function Class
Agbl4	ATP/GTP binding protein-like 4	Intron
Rr597468	regulatory region 597468	1332 bp distal
Rr597469	regulatory region 597469	685 bp proximal