rs48023889 SNP Detail

Summary

• ID
  rs48023889
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:87414998 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTCT GGGGGAGACA AGTTTCTCCC
  A
  CCCACAAAAG ACCTGAGGTT TTTGT                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135463101	ENSMUSSNP6255040	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss320833942	CHEV_3_87311613	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48023889					SNP	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87414998 () rs orientation: forward

Symbol	Name	Function Class
Gm40085	predicted gene, 40085	within coordinates
Gm56788	predicted gene, 56788	493 bp upstream
Rr397759	regulatory region 397759	915 bp downstream
Rr397760	regulatory region 397760	545 bp upstream
Rr579500	regulatory region 579500	432 bp distal
Rr579501	regulatory region 579501	304 bp proximal
Rr579502	regulatory region 579502	646 bp proximal
Rr579503	regulatory region 579503	712 bp proximal
Rr579504	regulatory region 579504	1247 bp proximal
Rr579505	regulatory region 579505	1442 bp proximal
Rr579506	regulatory region 579506	1472 bp proximal
Rr579507	regulatory region 579507	1748 bp proximal