rs48022607 SNP Detail

Summary

• ID
  rs48022607
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:118606305 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTCG AGCCTTCCTC CCTCCCCTTC
  C
  TTGTGCCCCC CCCCCCCCCC CCGGC                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss147312556	ENSMUSSNP4437311	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	A/J
rs48022607					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118606305 () rs orientation: forward

Symbol	Name	Function Class
D2Mit444	DNA Segment, Chr 2, Massachusetts Institute of Technology 444	958 bp distal
Gm54146	predicted gene, 54146	1225 bp upstream
Phgr1	proline/histidine/glycine-rich 1	Intron
Rr563336	regulatory region 563336	898 bp distal
Rr563337	regulatory region 563337	within coordinates
Rr563338	regulatory region 563338	80 bp proximal