rs47987471 SNP Detail

Summary

• ID
  rs47987471
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:84243936 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGAGCAGA GTTCGGAGTC
  TGGAAGGGCC CCCACCTACT CTCCCAGCAG CTGCCAAAGA CCACCGGGAA CATCTACCAG
  GGAAAAGATT TACGGCCAAG CTAGGAGGAG CGTCTGTCCG AGAAGATACC TACACAGCCG
  TTCTGACGGC AGGATTTACA AGCTCCTCCT TCATTTGCTA CTGAGTGGAA AAATACATTG
  K
  GCCCAGAACC GTTAGCTCCC TGCCAAGGCC TGTGACTCAC TCCCAAGTCA TAAATAACGG
  GTCCCTCATG ACAAAGCAGA GAAGGGAGCC GGGCCCAGGG CCACGTATTT ATTAGAAAAG
  AGAGTGGGAC CATTAGTCGG GGGCTTGGTT TCCGGGAAGG AACCACTCTT CACTGAAGGG
  CAAGAGATCC TTCCATGGGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60904640	NES15950368	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47987471					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60904640	NES15950368	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:84243936 () rs orientation: forward

Symbol	Name	Function Class
Gm44127	predicted gene, 44127	within coordinates
Gm67871	predicted gene, 67871	within coordinates
Rr633021	regulatory region 633021	within coordinates