rs47987449 SNP Detail

Summary

• ID
  rs47987449
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:81965820 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGGT ACCAGTCCTC ATGCCCATGT
  R
  GCAAGCACAT ATCTACTGGA CCATT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss133338871	ENSMUSSNP4955238	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss321840820	CHEV_6_81938833	CHEVERUD	SCREENING_POP	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs47987449					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:81965820 () rs orientation: forward

Symbol	Name	Function Class
Gm20383	predicted gene, 20383	within coordinates
Rr632571	regulatory region 632571	1581 bp distal
Rr632572	regulatory region 632572	1661 bp distal
Rr632573	regulatory region 632573	1242 bp distal
Rr632574	regulatory region 632574	1184 bp proximal
Rr632575	regulatory region 632575	1685 bp proximal