rs47979977 SNP Detail

Summary

• ID
  rs47979977
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:14712652 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTTTGTTT TAACTGGCCC
  ACATGCTTTA ACAGCACTGC TCGTACTCAC TGAGCCACCT CCCCAGCTCC AAGAAGCCAT
  TCCTGACCAA AAATTAACTG TGAATTTTAT CAGTGAACAC ACCACAAAAT TGCCACCATG
  GTACTTGAGG GTTTTGCTTG GCTGGGCCAA TGCACACCTG CACCTTGGCT AACATGGAGG
  Y
  ATCCACTCTT CAGAACATTA ATAGTTCATT GAAAGGTGAC ATCTAGGCAC AAAATCCTTT
  AGGAAGACTA TTCACTAAAT ATAGAAGGGG CTCTTGAGGG GAGACAAGAT AGGGATGCTC
  TAGACTCATC TCAGGGAATT TCACCTGACC CTGGTTCCTG GTGGTCTGGG ATGACTCCAC
  CCAGAACTTC CACCACTGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60371915	NES15873924	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs47979977					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60371915	NES15873924	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:14712652 () rs orientation: forward

Symbol	Name	Function Class
Car13	carbonic anhydrase 13	Intron
Rr374549	regulatory region 374549	117 bp upstream
Rr573698	regulatory region 573698	1139 bp proximal