rs47903624 SNP Detail

Summary

• ID
  rs47903624
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118941925 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTTTGTGCA ACCCCAGACG TTGGGGAGCT GAGTCCAATC
  TGGGTTACAA AGAACCTGTC TCAAAAATAA TTACCTGGGG CTGGCGAGAT GGCTTAAGTG
  R
  TTAAGAGTTC CCACTGCTCT TCCGAAGGTC CTGAGTTCAA ATCCCAGCAA CCACATGGTG
  GCTCACAACC ATCCGTAACG AAATCTGATG CCCTCTTCT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320473760	CHEV_2_118937180	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs47903624					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118941925 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12105	CpG island 12105	935 bp proximal
Gm57476	predicted gene, 57476	706 bp downstream
Rad51	RAD51 recombinase	1370 bp upstream
Rr563414	regulatory region 563414	85 bp proximal
Rr563415	regulatory region 563415	276 bp proximal
Rr563416	regulatory region 563416	873 bp proximal
Rr563417	regulatory region 563417	1376 bp proximal
Tssr19603	transcription start site region 19603	1365 bp upstream
Tssr25799	transcription start site region 25799	1304 bp downstream