rs47900114 SNP Detail

Summary

• ID
  rs47900114
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:84207271 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCCAGCCA GGATCTTCTG
  ATGCTGGACC CTCCTGTGAC TTCCACCAGA GAGAAGCAGA GATTTGCTGA GGAAGGGTGG
  GGAGCCTTAG AGGTTGGCCT CCTTAGGACT GTCATCATAA GGCTGAGAAG TTCGGCTTGA
  CCACAGCAAA AGAGAAAGAG GTCTCAGGTA CCCTGCCTGC TTCAGCCTGG TCCACAAGAT
  S
  AGTTAGTGTC CTTGGTTTCT TTCCCCTCAT GTGCCTGCCC CCCTCCCCCG ACCCCCAGCA
  GGGTTTCCCA AGAGGCTTCC CAGGGCCCAT AGTCTGCTAT CTGTTTTAGG CAGAGCGGGA
  CAAGCAGCTT TGATCTAAGC AGGGCCGTGA GATTATTATT TGACCACGGC TCTCCTGTTG
  TCTGTCAAGT TGTAGCAACC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60904853	NES15950947	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs47900114					SNP	C	C	C	C	C	C	C	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60904853	NES15950947	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:84207271 () rs orientation: forward

Symbol	Name	Function Class
Gm44127	predicted gene, 44127	within coordinates
Rr633014	regulatory region 633014	within coordinates
Rr633015	regulatory region 633015	651 bp proximal
Rr633016	regulatory region 633016	887 bp proximal