rs47878843 SNP Detail

Summary

• ID
  rs47878843
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148086499 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCAGA AAGCAGTTGG AAAAAAAAAA
  W
  AAGAATAAAC TTCAGCACCA AGGAC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147989417	ENSMUSSNP5806447	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
ss321416337	CHEV_4_147376151	CHEVERUD	SCREENING_POP	f	SNP			A	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47878843					SNP	A	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148086499 () rs orientation: forward

Symbol	Name	Function Class
Gm13054	predicted gene 13054	within coordinates
Nppa	natriuretic peptide type A	mRNA-UTR
Rr407043	regulatory region 407043	482 bp distal
Rr604546	regulatory region 604546	1310 bp distal
Rr604547	regulatory region 604547	321 bp distal
Tssr40239	transcription start site region 40239	1401 bp downstream
Tssr40240	transcription start site region 40240	1288 bp downstream
Tssr40241	transcription start site region 40241	931 bp downstream
Tssr40242	transcription start site region 40242	704 bp downstream
Tssr40243	transcription start site region 40243	238 bp downstream
Tssr40244	transcription start site region 40244	35 bp downstream
Tssr44568	transcription start site region 44568	21 bp downstream