rs47838920 SNP Detail

Summary

• ID
  rs47838920
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:29231785 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGGACAGA TTTAAAAACA
  GGGACATGCT AATTACCTGA ATACTGCCTG CCATTAACTA GTTTAGGATG GGTATGTGTG
  TCCAAGTTAC TGGGGGCAAA CTCATTGAAA ATAGCATCTC CTGCACATTT GAGTCTGGCT
  GTGATTCTGT GTAATGATGG AGCTGAGAAA AGATAGCAGG TTTCTTGAAT CAAAATTTCC
  Y
  GAATGGCCAA TGACTATGCT TTGATTCCCT TCTGTTTTAT GGTATTTTTC AGTTGCCTGA
  GATTTTAAAC CTCAGTGAAG GTTGTACCCC TGCCCCATTA ATGCAGGCTG AGAAATTCAA
  ATAATAGGTT TATTGAGCAC CTACTAATTT CCAGGCACTT ATTCAAAGCA TGGAAGATGC
  TTTTTTGATC TGAGGATGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60381446	NES15887207	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47838920					SNP	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60381446	NES15887207	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:29231785 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Egfem1	EGF-like and EMI domain containing 1			Intron
				Noncoding-Transcript-Variant
Gm38029	predicted gene, 38029			709 bp downstream
Rr574662	regulatory region 574662			313 bp distal