rs47832885 SNP Detail

Summary

• ID
  rs47832885
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:87415752 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTAGA GGCTCGGGGA TTCCCTTCTA
  C
  AACACCCTTC CGCTTCTTTT TTCTA                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135463134	ENSMUSSNP4597604	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47832885					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87415752 () rs orientation: forward

Symbol	Name	Function Class
Gm40085	predicted gene, 40085	within coordinates
Gm56788	predicted gene, 56788	within coordinates
Rr397759	regulatory region 397759	1669 bp downstream
Rr397760	regulatory region 397760	within coordinates
Rr579500	regulatory region 579500	1186 bp distal
Rr579501	regulatory region 579501	within coordinates
Rr579502	regulatory region 579502	87 bp distal
Rr579503	regulatory region 579503	21 bp distal
Rr579504	regulatory region 579504	493 bp proximal
Rr579505	regulatory region 579505	688 bp proximal
Rr579506	regulatory region 579506	718 bp proximal
Rr579507	regulatory region 579507	994 bp proximal