rs47811516 SNP Detail

Summary

• ID
  rs47811516
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141809713 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAATT ATCTGAATGG TAAGGTCAGA
  T
  GACTCCCTGC CCTAAAACCT AGAAT                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss147748398	ENSMUSSNP6307866	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs47811516					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141809713 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15252	CpG island 15252	1356 bp proximal
Rr603986	regulatory region 603986	1904 bp distal
Rr603987	regulatory region 603987	9 bp distal
Rr603988	regulatory region 603988	1406 bp proximal
Rr603989	regulatory region 603989	1898 bp proximal
Rr603990	regulatory region 603990	1949 bp proximal
Tmem51	transmembrane protein 51	Intron
Tmem51os1	Tmem51 opposite strand 1	1896 bp upstream
Tssr44419	transcription start site region 44419	1795 bp downstream
Tssr44420	transcription start site region 44420	1819 bp downstream