rs47773620 SNP Detail

Summary

• ID
  rs47773620
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:120806173 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTTA TTTGAGACAG AATCTCATTA
  W
  GTAGCCTTGA CTGGCCTCTA ACTCA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147374563	ENSMUSSNP4328883	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss320480946	CHEV_2_120801428	CHEVERUD	SCREENING_POP	f	SNP			T	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47773620					SNP	A	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:120806173 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12148	CpG island 12148	1250 bp proximal
Gm55820	predicted gene, 55820	1959 bp downstream
Rr563749	regulatory region 563749	289 bp proximal
Rr563750	regulatory region 563750	512 bp proximal
Rr563751	regulatory region 563751	823 bp proximal
Rr563752	regulatory region 563752	835 bp proximal
Rr563753	regulatory region 563753	1345 bp proximal
Rr563754	regulatory region 563754	1351 bp proximal
Rr563755	regulatory region 563755	1417 bp proximal
Rr563756	regulatory region 563756	1799 bp proximal
Tmem62	transmembrane protein 62	1325 bp upstream
Tssr19722	transcription start site region 19722	1389 bp upstream
Tssr19723	transcription start site region 19723	1456 bp upstream
Tssr19724	transcription start site region 19724	1556 bp upstream