rs47738330 SNP Detail

Summary

• ID
  rs47738330
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:118604629 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTAGT CTTCAAGTGT ACTGTGTTAT
  R
  GGGTTGTCAG TTCTGGGGTT GTCAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss147312446	ENSMUSSNP3201095	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss320471724	CHEV_2_118599884	CHEVERUD	SCREENING_POP	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs47738330					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118604629 () rs orientation: forward

Symbol	Name	Function Class
D2Mit444	DNA Segment, Chr 2, Massachusetts Institute of Technology 444	544 bp proximal
Gm54146	predicted gene, 54146	within coordinates
Phgr1	proline/histidine/glycine-rich 1	Intron
Rr563334	regulatory region 563334	1369 bp distal
Rr563335	regulatory region 563335	919 bp distal
Rr563336	regulatory region 563336	154 bp proximal
Rr563337	regulatory region 563337	1317 bp proximal
Rr563338	regulatory region 563338	1756 bp proximal
Tssr19573	transcription start site region 19573	1368 bp downstream