rs47726156 SNP Detail

Summary

• ID
  rs47726156
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:180075352 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTAGATGC TGGGTCCACT
  GCCCTCATAC TTGGCATTCT GGAAGCTGAG CTAAGCCCTG TGCTCAGAAG GTGTTCTGTG
  CCCTAGAGCT TTGGAACCAA GAGTCTCTAC AAGAGAACTC AGCTTAAGGG GACATAGCTT
  CAAAGGTCAC CTTGCCCTGA CATATGGGGG AATTCTTGCC AAGCAGGGGT CTGCAAGACT
  R
  TAAGGTCCCC TTCCTCTTTG AGAACTGGCT GTCTGTCATA TCTTAAACAC ACACCCACTA
  GACCCGAGAT CTCTTCCGTA TCTCTTCTGG CAACAGTGAA TTCTCTTCTC ACAGATATCT
  AGATCAGGGA TGTGCCTCGG TGGCAGAGCC TGCCATGCCT GAGGCCTTGG GTTTCATCCA
  CGGCCCCACA TCAAAGTTAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss146378718	ENSMUSSNP5296490	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs47726156					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:180075352 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Psen2	presenilin 2			Intron
				Noncoding-Transcript-Variant
Rr424422	regulatory region 424422			1692 bp distal
Rr424423	regulatory region 424423			102 bp proximal
Rr424424	regulatory region 424424			353 bp proximal
Rr424425	regulatory region 424425			1088 bp proximal
Rr424426	regulatory region 424426			1967 bp proximal
Tssr15530	transcription start site region 15530			1876 bp upstream
Tssr15531	transcription start site region 15531			1832 bp upstream