rs47689142 SNP Detail

Summary

• ID
  rs47689142
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:129086676 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGATTCCCC CGAAGCTGGC GTTACAGGCG GTGAGCCACC
  CACTACAGGT ACTGAATACT GAACTCCTTC CTGCCCTGGG CTCCTCTGGA AGAGCAGTAC
  R
  TATTGTTAAC CACTGAGCCG TCTCTCCGGC ACCTCTTGTA ACACTTCTGT TTGGAAGTCC
  TTCTTTTAGC CTCTTGGCTG CTCTCTAAGA GTCCTGGTT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147584285	ENSMUSSNP4413072	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs47689142					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129086676 () rs orientation: forward

Symbol	Name	Function Class
Gm14024	predicted gene 14024	1620 bp upstream
Rr373844	regulatory region 373844	1703 bp downstream
Rr373845	regulatory region 373845	1186 bp upstream
Rr564888	regulatory region 564888	1905 bp distal
Rr564889	regulatory region 564889	1160 bp distal
Rr564890	regulatory region 564890	540 bp distal
Rr564891	regulatory region 564891	97 bp distal
Rr564892	regulatory region 564892	within coordinates
Rr564893	regulatory region 564893	753 bp proximal
Tssr20109	transcription start site region 20109	1601 bp upstream