rs47682365 SNP Detail

Summary

• ID
  rs47682365
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:94236166 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCGAGCACG CGCGCACACA
  CACACACACA CACACACACA CACACACACG CACACACACA CACACACACA CACGCAGTCC
  TTAAAGCATC AGCAGTATGA AAGCAAATGC AGATGCAGGC ATCAGAAAGT TATATAAGAA
  AAGCGGTCAC TCCTCTGAGA AATCAGTTCA AGCATAGGTA ATCTAGTAAA CTGCAAATGC
  W
  GAGTGCCGGG CTGGGTCAAA GGAACTAGGA AGCAATGTAA AATACACCGG GAAATGAGGG
  CACTTAAGAA CTGAATGATG CGGGCACCGC CACCAGAGGC ATGCATCTTC TGGCATTCCT
  TCAGAAGGAG CAAGAATGGG TTGTCTTTAA AGAGCCCCTA ATGACCTGGC TAACGGCACA
  GCCTCAAACC ACCACATCGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss146954233	ENSMUSSNP5648681	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss320397648	CHEV_2_94245978	CHEVERUD	SCREENING_POP	f	SNP			A	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47682365					SNP	T	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:94236166 () rs orientation: forward

Symbol	Name	Function Class
2810002D19Rik	RIKEN cDNA 2810002D19 gene	886 bp upstream
Cpgi11962	CpG island 11962	193 bp proximal
Rr561373	regulatory region 561373	within coordinates
Rr561374	regulatory region 561374	311 bp proximal
Rr561375	regulatory region 561375	656 bp proximal
Rr561376	regulatory region 561376	848 bp proximal
Rr561377	regulatory region 561377	881 bp proximal
Rr561378	regulatory region 561378	935 bp proximal
Tssr19003	transcription start site region 19003	898 bp upstream
Tssr19004	transcription start site region 19004	942 bp upstream
Tssr25328	transcription start site region 25328	819 bp upstream
Tssr25329	transcription start site region 25329	826 bp downstream
Ttc17	tetratricopeptide repeat domain 17	Intron