rs47622465 SNP Detail

Summary

• ID
  rs47622465
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52164978 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTGTCTGT TCACAGCAGT
  AAAACCCTAA CCAAGACAGA GAGCAAGGGC TTTCTAGAGA GACCCTGACT CCAAAAAATA
  AAAGTAAATA TAATTTTAAT GTTATTATTG CAGGGGTGGG GTGTGAGAAG AGGTCAGAGG
  CCAACTCTCT CCACTGAGTT CTGAGAACTG AACTTGGGTC TTCTTGGTTT AGGAACACAA
  Y
  TTCCAATGGG CAACTCTTTC CAGTCCTGCA CATGAAGTTG GGATGCCAAG AGTGAGAGAC
  CCTGGAATCT GGTTCTAGCT TATGATAGAT ACAGGTTTGC TTGAATAAAT GGCCAGCCAA
  GTTATGTAAA TGATTAACCG TGTGATGGAC AAGTTTGATT CACAGTGATG TTTATTTGAT
  TGATTGATTG ATTGATTGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60410293	NES15916424	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47622465					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60410293	NES15916424	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52164978 () rs orientation: forward

Symbol	Name	Function Class
Gm30125	predicted gene, 30125	1061 bp downstream
Gm38132	predicted gene, 38132	1048 bp downstream
Gm66188	predicted gene, 66188	1145 bp upstream
Rr576482	regulatory region 576482	44 bp proximal
Rr576483	regulatory region 576483	275 bp proximal
Rr576484	regulatory region 576484	1070 bp proximal