rs47605439 SNP Detail

Summary

• ID
  rs47605439
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52664383 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCCCAGGT CTGCACCTCT
  ATAGGAAGAG GCGGAAATGT ACCCTGCACG TGGTTCCCAC CTCTTCCCTC CTCTTCAGAC
  CACACCTTCT TCCCTGCTGG GAAGCTTCTG ATGATGCCCT TTTACAGTTT GGTCAGAGCC
  AGTTATGATG GGCACTCAGT CCCAGCACTC AGGAGACAGG GGCAAGCCGA GGGTCTCTGA
  Y
  TCTGAGGCCA GCCAACCTGG TTTAAGTTCC AGGACAGGCA AAGGAGTCTA CTCAGAGAAA
  CCCTGCCTCA AAAAACCTAA ACCCAATGCA ACCGAAACAA AAACCAACAA CAACAAAACC
  AGATTGCTGG CAAAGGTTAC ATTCTGTAGC GCATGCCGGG GTGGGGATGG CGGTGGGCAA
  CAAACAGCAG AAACAATACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135178217	ENSMUSSNP919813	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
ss320765092	CHEV_3_52560884	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47605439					SNP	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52664383 () rs orientation: forward

Symbol	Name	Function Class
Gm2447	predicted gene 2447	within coordinates
Rr576580	regulatory region 576580	1560 bp distal
Rr576581	regulatory region 576581	1656 bp proximal
Rr576582	regulatory region 576582	1787 bp proximal
Tssr33262	transcription start site region 33262	1906 bp upstream