rs47592374 SNP Detail

Summary

• ID
  rs47592374
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:29419732 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAGATGAA TGTGAACAGA
  AACAAAGCCA ATGGACCCCT CCCATCCCTA GAATGATGTC TTGAGAGGCC TGGCATGCAA
  GCTGCCTTGG GCCATCTACA GGATGGCAGG GTCCAGTGTT TCGCTGGTTG GTAGGCAGCC
  TTATAGTGGA TTAGGCTTGG AGCTGGCCTA AGAGGCCACT GGAGAGTAAC AGCCATAATA
  Y
  ATAAGCAGTG CCAACCAGGG AAGTGCTCAG GGACAGACCA CAGGATTTGC TCACGAATCA
  ATGTAGGATC TTGAGAAAAG AGGCCTACAG TTGTGGCCGT ATGATTTGGG CTCACATATC
  CAAACTTAGC TCTGTTTTGG ATTGGGGGAG GACCCCTTAG GCTTGCTGCT TGGGGTGCCT
  GTGAGATCTC AAAGTGAAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61132459	NES16641045	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47592374					SNP	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61132459	NES16641045	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:29419732 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Del(5D5Mit348-D5Mit389)6Jcs	deletion, Chr 5, John C. Schimenti 6			within coordinates
Rnf32	ring finger protein 32			Intron
				Noncoding-Transcript-Variant
Rr46	regulatory region 46			1659 bp distal
Rr366632	regulatory region 366632			1930 bp downstream
Rr608827	regulatory region 608827			1994 bp distal