rs47590244 SNP Detail

Summary

• ID
  rs47590244
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:3443673 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCGTTGCCT GCGAGCGTTT
  GGGTGCAACA CCGTGCAAAC TGGGTGTTTT CGTTTTTTTG CTTTCTGGAT TTCTTCTAGG
  CGAAGAATTA AACCCGTGCG GTACAACTTT GATTGCTCCC AGGCAAACTG AGCGTTTTGT
  TGTTGTCCTC TCTTTATCTT CTTTTAAAGA ATTACCGCCT GTAGCTCGGT GAAAGAAACG
  R
  CTGGCCAAGC GAGGGAAAGT TTCTTGAAGT TTTTCACCCT CCGTCTTTGC TCGGGGCATT
  GGGACCTGGA GCTGACGTTC AAGGCCCCTT TCCATTTCTT GCTGGGAGCG TGACGAGTAT
  GGGCGATTTG AAGATTGAAG GGCTTGGGTT TGGGTTTTTT GTTTGGGGGT TTTGTTGTTT
  TGTTTTGTTT TGCAGGTGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61077159	NES16044711	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47590244					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61077159	NES16044711	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:3443673 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Arhgef18	Rho/Rac guanine nucleotide exchange factor 18			Intron
				Noncoding-Transcript-Variant
Cpgi20017	CpG island 20017			321 bp distal
Gm64114	predicted gene, 64114			1566 bp downstream
Rr381632	regulatory region 381632			within coordinates
Rr658901	regulatory region 658901			625 bp distal
Rr658902	regulatory region 658902			713 bp distal
Rr658903	regulatory region 658903			37 bp distal
Rr658904	regulatory region 658904			949 bp proximal
Tssr76040	transcription start site region 76040			658 bp downstream
Tssr76041	transcription start site region 76041			620 bp downstream