rs47554344 SNP Detail

Summary

• ID
  rs47554344
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:76418294 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTTTCTT TCTTTCTCTA
  TTTATTTACT TCTGATATGG GTCCTGGGGA TCTTACTCAA GGTTCTGCGC TTGAGTGGCA
  AGCACTTCAT TGACCAAGTT CTGCTGCCAG CCCTAGACTT GTGATTAGAA GAGTTTCCAT
  TTTCATTGTC CATTTAGAAG AACATTGCCC CAGCTTCCTT TGTGACTTGT ACTATATAAA
  M
  GTTATGTTCT CTGCTTCCTA AATCCTGGGC TGACTGCTCC TGTGAGTAGC CACGTCTGCT
  GGAAGGTTCC TTATACCGCT ATTCCTGACA GTTTTCAGAT TTAGATACAT ATGTCTTTTT
  TTTTTCAATT TTTTATTAGG TATTTTCTTC ATTTACATTT CAAATGCTAT CCCGAAAGTC
  CCCTATACCC CCCCCCCTAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ
ss61289532	NES16898886	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ
rs47554344					SNP	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61289532	NES16898886	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:76418294 () rs orientation: forward

Symbol	Name	Function Class
Ftcd	formiminotransferase cyclodeaminase	Intron
Tssr94192	transcription start site region 94192	914 bp downstream
Tssr94193	transcription start site region 94193	1415 bp upstream
Tssr94194	transcription start site region 94194	1432 bp upstream