rs47529374 SNP Detail

Summary

• ID
  rs47529374
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:117768734 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCACACCAC ACCACACACG
  TACGCACATG TGAATTCAAA ACCTCACCTT TGAGGGATTT TAATATCGAA AACACTAGTA
  TGGGTGCTTT CTAATTATCA CTTAATGAAT AATAAAAAAA CCTCTTGTGC TGGGTCTTTA
  AAACAATCAT TTATGCTTAT ATTGATGATA TCCTTAAAAG CTCAGCTTAT ATTTTTTTCA
  R
  CAAATGCAGT AATTCCACAT TTTAAATAAA TGGTATAGAG AGACTCCAAA ATTATAGAAT
  ACATTATGGT ACTCATTTAT TTATCTCCAG TATTTGATTC CTAAGAGAAC AAGAAGAAAA
  GGAAAGTGGC TTCATAAAAC AGAAAGTGAA TACTCAAAAC AAATGACATC TAAGCCTTCA
  GAGAACTACG ATGGCCTTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss135695321	ENSMUSSNP1515340	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs47529374					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:117768734 () rs orientation: forward

Symbol	Name	Function Class
4921521D15Rik	RIKEN cDNA 4921521D15 gene	1548 bp downstream
Gm32344	predicted gene, 32344	within coordinates
Rr583879	regulatory region 583879	642 bp proximal
Rr583880	regulatory region 583880	722 bp proximal