rs47526215 SNP Detail

Summary

• ID
  rs47526215
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108804182 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAAAATAGGA ATACATGCTA GCGTTCTGAA AACCTGTTCT
  ATTGGCACTT ATTGTCAGTT GTGCCATGAA AAGCATTTTT CATAAACTAG CTGGTTTTCT
  M
  TGGTTATTAG ACTCGTCTTT TAAAATTAGG GCTTTTCTGT AATGTGAGAA CAGTTGCTGT
  CATCAGTGGC TGACAGCTGA CCAGAGTGCA AGCTACATT                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss133510067	ENSMUSSNP4971518	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs47526215					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108804182 () rs orientation: forward

Symbol	Name	Function Class
Edem1	ER degradation enhancer, mannosidase alpha-like 1	Noncoding-Transcript-Variant
Gm35417	predicted gene, 35417	within coordinates
Rr399821	regulatory region 399821	1838 bp downstream
Rr399822	regulatory region 399822	262 bp upstream
Rr399823	regulatory region 399823	1115 bp upstream
Rr636211	regulatory region 636211	1654 bp distal
Rr636212	regulatory region 636212	310 bp distal
Rr636213	regulatory region 636213	86 bp proximal
Rr636214	regulatory region 636214	1123 bp proximal
Rr636215	regulatory region 636215	1928 bp proximal
Tssr58099	transcription start site region 58099	1287 bp upstream
Tssr58100	transcription start site region 58100	1305 bp upstream
Tssr58101	transcription start site region 58101	1328 bp upstream
Tssr58102	transcription start site region 58102	1341 bp upstream
Tssr58103	transcription start site region 58103	1374 bp upstream
Tssr58104	transcription start site region 58104	1384 bp upstream
Tssr58105	transcription start site region 58105	1412 bp upstream
Tssr58106	transcription start site region 58106	1513 bp upstream
Tssr58107	transcription start site region 58107	1905 bp upstream
Tssr62395	transcription start site region 62395	1160 bp downstream