rs47508035 SNP Detail

Summary

• ID
  rs47508035
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:174274849 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGAAGGAAA AGGGATAAGG
  CCCCTGGGTT ATTCCATAAA GCAGTCCATT GCCTTCCCTC CACCCTGTGT CTGTCCCCCT
  GGTGGGATCT CTGGTCCCTG CTGGGTTTGC TCATCCAGAA CAAAGGACAC CCAATTACAG
  CAGAGAATTC TTTCTCTGTA AGTAAGGCCC ATGAGACCAT CCACATGCCA GCTGTGCACA
  Y
  GCACATGCCA CATCCAGTCA TGCGGTGCTC TGCTTTATTT TATTTGTTTG TTTGTTTACT
  TTTAAGATTT GAGATTGGGT GGGGCAGTGG CGGTGCACAC CTTTAATCCC AGCACTTGGG
  AGGCAGAGGC AAGCAGATTT CTGAGTTCGA GGCCAGCCTG GTCTACAGAG TGAGTTCCAG
  GACAGCCAGG GCTATACAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss148343377	ENSMUSSNP6218418	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs47508035					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174274849 () rs orientation: forward

Symbol	Name	Function Class
Ctsz	cathepsin Z	Intron
Rr572121	regulatory region 572121	1457 bp proximal
Tssr28023	transcription start site region 28023	615 bp upstream
Tssr28024	transcription start site region 28024	492 bp downstream
Tssr28025	transcription start site region 28025	571 bp downstream