rs47501458 SNP Detail

Summary

• ID
  rs47501458
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:47056066 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTGGATCT CTCTAAGTTT
  GAGGGAAGCC TGGTCTATAG AGCGAGTTTT AGAAAGGCCA GGCCTACAAG GAGAAACCCT
  GACTTGAAAA ATCTAAATCA ATCAATTGAT TGATGGTTAA TTAATTTACT GTCTGTGGTC
  AGGGTTTACC AGCGCTTTAT ACAGGTCACT CACAATACAA AAGAAATAAA TGAGCTAGAA
  Y
  GCTCTCTTTG GCAGCACATA CACTAAAATT GGAATGATAC AGAGATTAGC ATGGTCCCTG
  CACAAGGATG GCACACAAAG CAAGGAACTA GAGACGACTC TGAGGTCAAG GGCTTGCCAC
  TCTTTCAGAG GACCTGAGTT AGTTTCCAGT ACTCCCATTC CCTGTGAATC CAGCTCTGCC
  CTCTGCTGGT ATCCATGGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss148981282	ENSMUSSNP2720380	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs47501458					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:47056066 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm22960	predicted gene, 22960			Noncoding-Transcript-Variant
Kif13a	kinesin family member 13A			Intron
				Noncoding-Transcript-Variant
Rr478995	regulatory region 478995			1413 bp distal
Rr478996	regulatory region 478996			173 bp proximal
Rr478997	regulatory region 478997			279 bp proximal