rs47441003 SNP Detail

Summary

• ID
  rs47441003
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121083764 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGGGGATT CTGAAAAGAT
  GTGTTTTCCT TAATACAGAC CCAATGACCA ACACAACAAC TTCTAAGGTA GACATCACCA
  TGTCTGCCCA CTAATAACTT CTTTTAAATA TGAAGCGACT CGTAGGTTGA AGCCACTTTG
  GAGAACAGCA GAGAAGGTTC TGAAAGAAAA CGGCATGACA CTTTGTAACA TTCTTGAGCC
  W
  CTCCTTCTTC CTGTGTATGT TAATGTGTGT GTGTGTGTGT ACATGTGTGT GTGTGAGGAG
  GTCAGAGGTC AACATTGTCT TTCTCAATTG CTTCTCTGCC TTATTTTCGT TTTCAATGAT
  TTGTTGTTGT TGTTTCTATG TGTGTATGTG TTTTGCCTGG ATTATCTCTG GGCACCATGT
  GTGTGCCTGC AGAGGTTGGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60440896	NES15941008	PERLEGEN	MM_PANEL2	f	SNP	A	T	A	T	T	T	A	A	A	A	A	A	A	T
ss135717627	ENSMUSSNP1443946	ENSEMBL	ENSEMBL_Sanger	f	SNP		T					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47441003					SNP	A	T	A	T	T	T	A	A	A	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60440896	NES15941008	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121083764 () rs orientation: forward

Symbol	Name	Function Class
Alg14	asparagine-linked glycosylation 14	1658 bp upstream
Cpgi13756	CpG island 13756	1367 bp proximal
Gm56787	predicted gene, 56787	738 bp downstream
Rr367543	regulatory region 367543	1423 bp upstream
Rr375663	regulatory region 375663	within coordinates
Rr584038	regulatory region 584038	486 bp proximal
Rr584039	regulatory region 584039	1508 bp proximal
Rr584040	regulatory region 584040	1716 bp proximal
Tssr31434	transcription start site region 31434	1610 bp upstream
Tssr31435	transcription start site region 31435	1706 bp upstream
Tssr31436	transcription start site region 31436	1736 bp upstream
Tssr35412	transcription start site region 35412	1483 bp downstream