rs47432772 SNP Detail

Summary

• ID
  rs47432772
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:130041751 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAAATTAGT GGTGATGTTA
  TTTTCAGTAG GTAGACATCT ACTGAAATTC CTGTAGATGT ATAAAACCTT CATTGTGCTG
  AAAGTTCTCT AATCCAGGAG CATTTGTGAA ACTTCTCCAG ATATTAAACC TTCAGTTACT
  TGCAGGGAGA AGAAACAATC ACTAGATTGT GTGCACTGCA AGAGGGCATG TAGGGGTCTC
  R
  ACACCTCTTA CATACATTTT CAAAGATGCT CTAGTGTTTC ACCCCATCTT TACCCCAATG
  ACCCTTCCCC AAATACTTGG TACTACAAAT GTTGGAATTA TCTGTGGGAT GCTTCTGTAA
  TATATATGTA GTTATTTTCA TTTTTGTCAT TTGAAGACTT AACTGTGTGA TATGAGGCAT
  CTCATTTGTC ACAAAGATCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145472987	ENSMUSSNP828906	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss319970939	CHEV_1_132010591	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47432772					SNP	A	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:130041751 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr417893	regulatory region 417893			157 bp distal
Thsd7b	thrombospondin, type I, domain containing 7B			Intron
				Noncoding-Transcript-Variant