rs47425604 SNP Detail

Summary

• ID
  rs47425604
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127655556 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGGGTGGG CCAGACTGAA
  AATACTGATG GTCCACATAG AACACTTTGA ATGGCAGAGT AAGACTGATC AGACAACTCA
  AAGAAATATA TTACATATGC AACATGCTTT TGTAGACTAT AATAATAATA ATATTTATGA
  AAATAATGCC AACCATTTAC TCCATTGCTT GGCTTCTACT GGTCTACAGA CTGTATCGAT
  Y
  GACATTGGTG TTATGTTTAT AAAAAGATAA AGAGAAGGGG GGTATGTTCT ATGGAGGTGT
  AGTCAGGTAT GGGGGAAGGG GGCTCCTTGG TGGGCCCATG CTGGGGGCCC ATCCCTTCCC
  CCTGAGGGAC CAGCCACATG ATGGTATAGT ATAGAATGGA GTTTATTTAG GACATAGGGA
  GGGGAGTTAA GAGGGTAGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss135873398	ENSMUSSNP2633374	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss320957599	CHEV_3_127564825	CHEVERUD	SCREENING_POP	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs47425604					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127655556 () rs orientation: forward

Symbol	Name	Function Class
Gm35585	predicted gene, 35585	within coordinates
Gm43652	predicted gene 43652	1277 bp downstream
Rr584887	regulatory region 584887	217 bp distal
Rr584888	regulatory region 584888	606 bp proximal
Tssr31614	transcription start site region 31614	292 bp downstream