rs47424264 SNP Detail

Summary

• ID
  rs47424264
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52662110 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAACCTCCA GAGTGCATGT
  CACAGCCCCA AGTGACCCTG GTTGTGTCAG CAGCTCCACT GGGTGTATGA CCTTTGGCAC
  AAATAAAATG TATTTACTCA TGCCTGAATT CCAGTGACAA GTCCCCTTAG ATAAAGCTCC
  ACTAGGGGCC ACCTGCCCTC AATGACCTGC AAGGCTTTCA GGACCAGCTT TCGTGCTCTG
  Y
  GCACCTCCTA CCGAGGGCTG CCTCACTGGA AAGACTTGAC TTCCAGCACA CAGGGAGGGA
  GGTGGGACTC TGACTTCTAC AGTCCATTTG GCTTTGCTTC CCTTTGAAGC CATTATTGAG
  AAGCTTTCCG AGCACGGATC TGCAAACACA GACACCAAGG AATCCTGGGC CCAGAGTTCA
  AACAAAAGTG TAAGGACAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss135178175	ENSMUSSNP367909	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs47424264					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52662110 () rs orientation: forward

Symbol	Name	Function Class
Gm2447	predicted gene 2447	within coordinates
Rr576580	regulatory region 576580	within coordinates
Tssr33262	transcription start site region 33262	356 bp downstream