rs47387438 SNP Detail

Summary

• ID
  rs47387438
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:84246349 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGAGAACA GATGGGGGGC
  AGAGGAGGGG CCCTATGAAC TGGGGTGGAG CGCCACCACG TGGACTTGGG GAGTGGAACT
  CCTCACCCCT GTGGATCTCC AGTAAATAGG GCAGAGAATG TTCAGGCTGG CTCTTGGGTC
  TTGGGGTGGA GGCCTTAGTC CTATTTTCCA TAGGCCCCAT ATGGACTTCA CTCCCTTGAA
  M
  AGTCTTCATC AAGAGGTTCT CAACACACCT TTGCCTCAGA CCATGCTGTA GGTTGAGTGT
  TCAGGTTGCC ACTTTATTCT CATTGAAACA GCATTAAGAC TCAGGATGGG GGTCAAGTCC
  TGGGGTAGTG TCATTACACA TATTACTGTG GAACTGTTCT TCTGCCAGAT GGAGAGTTGT
  CAATGTCCCC ACATCATACA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60904630	NES15950383	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47387438					SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60904630	NES15950383	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:84246349 () rs orientation: forward

Symbol	Name	Function Class
Gm44127	predicted gene, 44127	within coordinates
Gm67871	predicted gene, 67871	within coordinates
Rr633022	regulatory region 633022	133 bp distal
Rr633023	regulatory region 633023	1185 bp proximal
Rr633024	regulatory region 633024	1771 bp proximal