rs47361265 SNP Detail

Summary

• ID
  rs47361265
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:115593737 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATATGAGGGC CTTGGAGCTC CTGGAACTGG AGTTACAGAC
  AGTTGTGAGC TGCCATGCAG ATGCTAGTAA TTGAACCCAG GTCCTCTGGA AGAGCAGTCA
  K
  TGCTCTCTTA ATCCCTGAGC CATCTCTGCA GCCCCTAGAG TCATCTTCTA TAAACTGAAA
  ATTCAGAGTA TGTTCCTCAA TGGTTTTTCA AACTCCTTC                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147275237	ENSMUSSNP3936571	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss321276232	CHEV_4_115409145	CHEVERUD	SCREENING_POP	f	SNP			G	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47361265					SNP	T	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:115593737 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14611	CpG island 14611	925 bp proximal
Efcab14	EF-hand calcium binding domain 14	1204 bp upstream
Rr597763	regulatory region 597763	714 bp proximal
Rr597764	regulatory region 597764	955 bp proximal
Rr597765	regulatory region 597765	1141 bp proximal
Rr597766	regulatory region 597766	1420 bp proximal
Tssr38464	transcription start site region 38464	1198 bp upstream
Tssr38465	transcription start site region 38465	1214 bp upstream
Tssr38466	transcription start site region 38466	1283 bp upstream
Tssr38467	transcription start site region 38467	1873 bp upstream