rs47358207 SNP Detail

Summary

• ID
  rs47358207
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:62246221 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGACGCCCA CAAGTGGCCC
  AGTGAAGTGT CGCAGCAGCA CCAAGCTCCG AAGTGTTTCA CCCTTCCAAC CTTCCCCTCC
  AGGTCTAGGG ATGATCAAGA AGCCCTTTCT CTGCTCTCAC GACCATTCCC ACGCAGTGTT
  CAGATCTGCG ACCGCGCCCT CCAGCTGGCC CGTAGGGCGG CCGCCCGCGC TCCTGCATTC
  W
  TGCACTCAGG GTCTGGACAG GCAGCTCAGG TGTGCGCGTC CCGTTTACAA TCACTGAGCG
  CACTCCGGGA AGGCAGGGGC GGGAACTCCT GGGCGCCTCG GTGCGAGCTT CCCCGGCGTG
  CTGGGGCGGG GCGTAGCGCG GGGGCGGGGC CGGCGCCGCG GGCCTCTGCT GTCCCAGGCT
  GAGCGGTTGT CTCCGCGCTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss60415942	NES15920340	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	A	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs47358207					SNP	T	T	T	A	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60415942	NES15920340	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:62246221 () rs orientation: forward

Symbol	Name	Function Class
9330121J05Rik	RIKEN cDNA 9330121J05 gene	within coordinates
Arhgef26	Rho guanine nucleotide exchange factor 26	mRNA-UTR
Cpgi13214	CpG island 13214	within coordinates
Rr577511	regulatory region 577511	1722 bp proximal
Tssr29350	transcription start site region 29350	141 bp upstream
Tssr29351	transcription start site region 29351	224 bp upstream
Tssr29352	transcription start site region 29352	773 bp upstream
Tssr29353	transcription start site region 29353	1246 bp upstream