rs47356174 SNP Detail

Summary

• ID
  rs47356174
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:161617851 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCTG CCAAACAGAC AGACCAGACA
  R
  GAATTTCTCA AATGTGAGTA AAGAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145922276	ENSMUSSNP5372212	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47356174					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:161617851 () rs orientation: forward

Symbol	Name	Function Class
Fasl	Fas ligand	1787 bp upstream
Rr421846	regulatory region 421846	1611 bp distal
Rr421847	regulatory region 421847	1270 bp proximal
Tssr14586	transcription start site region 14586	1907 bp upstream
Tssr14587	transcription start site region 14587	1826 bp upstream
Tssr14588	transcription start site region 14588	1811 bp upstream
Tssr14589	transcription start site region 14589	1799 bp upstream
Tssr14590	transcription start site region 14590	1786 bp upstream
Tssr14591	transcription start site region 14591	1776 bp upstream