rs47321408 SNP Detail

Summary

• ID
  rs47321408
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141809700 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACCC TCACACCAGA ATTATCTGAA
  C
  GGTAAGGTCA GACGACTCCC TGCCC                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss147748394	ENSMUSSNP820624	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs47321408					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141809700 () rs orientation: forward

Symbol	Name	Function Class
Rr603986	regulatory region 603986	1891 bp distal
Rr603987	regulatory region 603987	within coordinates
Rr603988	regulatory region 603988	1419 bp proximal
Rr603989	regulatory region 603989	1911 bp proximal
Rr603990	regulatory region 603990	1962 bp proximal
Tmem51	transmembrane protein 51	Intron
Tmem51os1	Tmem51 opposite strand 1	1909 bp upstream
Tssr44419	transcription start site region 44419	1808 bp downstream
Tssr44420	transcription start site region 44420	1832 bp downstream