rs47271822 SNP Detail

Summary

• ID
  rs47271822
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79123727 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTCAGGTCA ATCAAGAAGA CCTATACAGA TGTAGTACAG
  CCACCATCCC GTGTTTTCCC ACCAAGCTGC CTGCAAAACT CTTACAATCT GCCTGACACC
  T
  ATACTGCTTT TTTTTTTTTC AAGGAAAATT CACAAAATAA CCCACATGCA TTATCCAGTA
  GGAAGTTCAC ACTGAGCGAC CAAGAAAGTA TTAGAAAGA                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135368925	ENSMUSSNP1058673	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47271822					SNP	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79123727 () rs orientation: forward

Symbol	Name	Function Class
4921511C10Rik	RIKEN cDNA 4921511C10 gene	within coordinates
Rapgef2	Rap guanine nucleotide exchange factor (GEF) 2	Intron
Rr375215	regulatory region 375215	1451 bp upstream
Rr578485	regulatory region 578485	1993 bp proximal